pcconstants Module¶
cleave_rules¶
A dictionary that maps a number of proteases to regular expressions.
uniprot_options¶
A dictionary that maps UniProt database types to their REST API equivalents.
ncbi_ranks¶
A set of all valid taxonomic ranks.
valid_quant_cols¶
A tuple of columns ProteoClade will assume are for quantification.
valid_sample_cols¶
A tuple of columns ProteoClade will assume are for samples.
valid_pep_cols¶
A tuple of columns ProteoClade will assume are for peptide sequences.
valid_score_cols¶
A tuple of columns ProteoClade will assume are for scores.
basic_annotations¶
A tuple (“organisms”,”genes”) which ProteoClade will annotate by default.
proteoclade_cols¶
A set of all columns ProteoClade uses and recognizes.